User Interfaces
ExoPLOT expression of alternatively spliced TEs
paPAML analyses of positive and negative selection
CDS-extractor NCBI download of coding sequences (CDS)
2-way generation of genome pairwise alignments
n-way presence/absence analyses of genome pairwise alignments
GPAC presence/absence analyses of multi-genome alignments
4-LIN presence/absence significance for four lineage phylogenies
KKSC presence/absence significance for three lineage phylogenies
TinT transposition in transposition analysis
UCSC2FASTA transfers UCSC alignments into fasta
pde2fasta transfers pde (PhyDE) files into fasta
fastCOEX extraction and labeling of fasta sequences