User Interfaces
CDS-extractor NCBI download of coding sequences (CDS)
NTM-Newick tree pruning and modification
paPAML parallel analyses of positive and negative selection
SPOT selection pressure over time
ExoPLOT expression of alternatively spliced exons
2-way generation of genome pairwise alignments
n-way presence/absence analyses of genome pairwise alignments
GPAC presence/absence analyses of multi-genome alignments
4-LIN presence/absence significance for four lineage phylogenies
KKSC presence/absence significance for three lineage phylogenies
TinT transposition in transposition analysis
UCSC2FASTA transfers UCSC alignments into fasta
pde2fasta transfers pde (PhyDE) files into fasta
fastCOEX extraction and labeling of fasta sequences