retrogenomics.uni-muenster.de	User Interfaces
CDS-extractor	NCBI download of coding sequences (CDS)
NTM-Newick	tree pruning and modification
paPAML	parallel analyses of positive and negative selection
SPOT	selection pressure over time
ExoPLOT	expression of alternatively spliced exons
2-way	generation of genome pairwise alignments
n-way	presence/absence analyses of genome pairwise alignments
GPAC	presence/absence analyses of multi-genome alignments
4-LIN	presence/absence significance for four lineage phylogenies
KKSC	presence/absence significance for three lineage phylogenies
TinT	transposition in transposition analysis
UCSC2FASTA	transfers UCSC alignments into fasta
pde2fasta	transfers pde (PhyDE) files into fasta
fastCOEX	extraction and labeling of fasta sequences